Index

A

action (jaxdem.rl.TrajectoryData attribute) action_space_shape (jaxdem.rl.Environment property) (jaxdem.rl.environments.Environment property) (jaxdem.rl.environments.multi_navigator.MultiNavigator property) (jaxdem.rl.environments.multi_roller.MultiRoller property) (jaxdem.rl.environments.MultiNavigator property) (jaxdem.rl.environments.MultiRoller property) (jaxdem.rl.environments.single_navigator.SingleNavigator property) (jaxdem.rl.environments.single_roller.SingleRoller3D property) (jaxdem.rl.environments.SingleNavigator property) (jaxdem.rl.environments.SingleRoller3D property) action_space_size (jaxdem.rl.Environment property) (jaxdem.rl.environments.Environment property) (jaxdem.rl.environments.multi_navigator.MultiNavigator property) (jaxdem.rl.environments.multi_roller.MultiRoller property) (jaxdem.rl.environments.MultiNavigator property) (jaxdem.rl.environments.MultiRoller property) (jaxdem.rl.environments.single_navigator.SingleNavigator property) (jaxdem.rl.environments.single_roller.SingleRoller3D property) (jaxdem.rl.environments.SingleNavigator property) (jaxdem.rl.environments.SingleRoller3D property) ActionSpace (class in jaxdem.rl) (class in jaxdem.rl.actionSpaces) actor_mu (jaxdem.rl.models.ActorCritic attribute) (jaxdem.rl.models.LSTM.LSTMActorCritic attribute) (jaxdem.rl.models.LSTMActorCritic attribute) (jaxdem.rl.models.MLP.ActorCritic attribute) (jaxdem.rl.models.MLP.SharedActorCritic attribute) (jaxdem.rl.models.SharedActorCritic attribute) actor_sigma (jaxdem.rl.models.ActorCritic attribute) (jaxdem.rl.models.LSTM.LSTMActorCritic attribute) (jaxdem.rl.models.LSTMActorCritic attribute) (jaxdem.rl.models.MLP.ActorCritic attribute) (jaxdem.rl.models.MLP.SharedActorCritic attribute) (jaxdem.rl.models.SharedActorCritic attribute) actor_torso (jaxdem.rl.models.ActorCritic attribute) (jaxdem.rl.models.MLP.ActorCritic attribute) ActorCritic (class in jaxdem.rl.models) (class in jaxdem.rl.models.MLP) add() (jaxdem.DeformableParticleContainer static method) (jaxdem.forces.deformable_particle.DeformableParticleContainer static method) (jaxdem.forces.DeformableParticleContainer static method) (jaxdem.State static method) (jaxdem.state.State static method) add_clump() (jaxdem.State static method) (jaxdem.state.State static method) add_force() (jaxdem.ForceManager static method) (jaxdem.forces.force_manager.ForceManager static method) (jaxdem.forces.ForceManager static method)

add_force_at() (jaxdem.ForceManager static method) (jaxdem.forces.force_manager.ForceManager static method) (jaxdem.forces.ForceManager static method) add_torque() (jaxdem.ForceManager static method) (jaxdem.forces.force_manager.ForceManager static method) (jaxdem.forces.ForceManager static method) add_torque_at() (jaxdem.ForceManager static method) (jaxdem.forces.force_manager.ForceManager static method) (jaxdem.forces.ForceManager static method) advantage_c_clip (jaxdem.rl.Trainer attribute) advantage_gamma (jaxdem.rl.Trainer attribute) advantage_lambda (jaxdem.rl.Trainer attribute) advantage_rho_clip (jaxdem.rl.Trainer attribute) allocate_counts() (in module jaxdem.utils.dispersity) alpha (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) alpha_init (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) anchor (jaxdem.Domain attribute) (jaxdem.domains.Domain attribute) angle() (in module jaxdem.utils) (in module jaxdem.utils.angles) angle_between_normals() (in module jaxdem.forces.deformable_particle) angle_x() (in module jaxdem.utils) (in module jaxdem.utils.angles) angVel (jaxdem.State attribute) (jaxdem.state.State attribute) anneal_importance_sampling_beta (jaxdem.rl.trainers.PPOTrainer attribute) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer attribute) apply() (jaxdem.Domain static method) (jaxdem.domains.Domain static method) (jaxdem.domains.free.FreeDomain static method) (jaxdem.domains.FreeDomain static method) (jaxdem.domains.reflect.ReflectDomain static method) (jaxdem.domains.reflect_sphere.ReflectSphereDomain static method) (jaxdem.domains.ReflectDomain static method) (jaxdem.domains.ReflectSphereDomain static method) (jaxdem.ForceManager static method) (jaxdem.forces.force_manager.ForceManager static method) (jaxdem.forces.ForceManager static method) attempt_couple (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute)

B

batch_size (jaxdem.State property) (jaxdem.state.State property) bij (jaxdem.rl.models.ActorCritic attribute) (jaxdem.rl.models.LSTM.LSTMActorCritic attribute) (jaxdem.rl.models.LSTMActorCritic attribute) (jaxdem.rl.models.MLP.ActorCritic attribute) (jaxdem.rl.models.MLP.SharedActorCritic attribute) (jaxdem.rl.models.SharedActorCritic attribute) bin_id (jaxdem.analysis.Pairs attribute), [1] (jaxdem.analysis.pairs.Pairs attribute), [1] binary (jaxdem.VTKWriter attribute) (jaxdem.writers.VTKWriter attribute) (jaxdem.writers.vtkWriter.VTKWriter attribute) Binned (class in jaxdem.analysis) (class in jaxdem.analysis.engine) BinnedResult (in module jaxdem.analysis.engine) bins() (jaxdem.analysis.bins.BinSpec method) (jaxdem.analysis.BinSpec method) BinSpec (class in jaxdem.analysis) (class in jaxdem.analysis.bins) bisection_jam() (in module jaxdem.utils.jamming)

block_until_ready() (jaxdem.CheckpointLoader method) (jaxdem.CheckpointModelLoader method) (jaxdem.CheckpointModelWriter method) (jaxdem.CheckpointWriter method) (jaxdem.VTKWriter method) (jaxdem.writers.CheckpointLoader method) (jaxdem.writers.CheckpointModelLoader method) (jaxdem.writers.CheckpointModelWriter method) (jaxdem.writers.checkpoints.CheckpointLoader method) (jaxdem.writers.checkpoints.CheckpointModelLoader method) (jaxdem.writers.checkpoints.CheckpointModelWriter method) (jaxdem.writers.checkpoints.CheckpointWriter method) (jaxdem.writers.CheckpointWriter method) (jaxdem.writers.VTKWriter method) (jaxdem.writers.vtkWriter.VTKWriter method) box_size (jaxdem.Domain attribute) (jaxdem.domains.Domain attribute) BoxSpace (class in jaxdem.rl.actionSpaces) (class in jaxdem.rl.actionSpaces.boxSpace) build_pairs() (in module jaxdem.analysis) (in module jaxdem.analysis.pairs)

C

cell (jaxdem.rl.models.LSTM.LSTMActorCritic attribute) (jaxdem.rl.models.LSTMActorCritic attribute) cell_list (jaxdem.colliders.neighbor_list.NeighborList attribute), [1] (jaxdem.colliders.NeighborList attribute), [1] cell_size (jaxdem.colliders.cell_list.DynamicCellList attribute) (jaxdem.colliders.cell_list.StaticCellList attribute) (jaxdem.colliders.DynamicCellList attribute) (jaxdem.colliders.StaticCellList attribute) checkpointer (jaxdem.CheckpointLoader attribute) (jaxdem.CheckpointModelLoader attribute) (jaxdem.CheckpointModelWriter attribute) (jaxdem.CheckpointWriter attribute) (jaxdem.writers.CheckpointLoader attribute) (jaxdem.writers.CheckpointModelLoader attribute) (jaxdem.writers.CheckpointModelWriter attribute) (jaxdem.writers.checkpoints.CheckpointLoader attribute) (jaxdem.writers.checkpoints.CheckpointModelLoader attribute) (jaxdem.writers.checkpoints.CheckpointModelWriter attribute) (jaxdem.writers.checkpoints.CheckpointWriter attribute) (jaxdem.writers.CheckpointWriter attribute) CheckpointLoader (class in jaxdem) (class in jaxdem.writers) (class in jaxdem.writers.checkpoints) CheckpointModelLoader (class in jaxdem) (class in jaxdem.writers) (class in jaxdem.writers.checkpoints) CheckpointModelWriter (class in jaxdem) (class in jaxdem.writers) (class in jaxdem.writers.checkpoints) CheckpointWriter (class in jaxdem) (class in jaxdem.writers) (class in jaxdem.writers.checkpoints) clean (jaxdem.CheckpointModelWriter attribute) (jaxdem.VTKWriter attribute) (jaxdem.writers.CheckpointModelWriter attribute) (jaxdem.writers.checkpoints.CheckpointModelWriter attribute) (jaxdem.writers.VTKWriter attribute) (jaxdem.writers.vtkWriter.VTKWriter attribute) clip_action_env() (in module jaxdem.rl) (in module jaxdem.rl.envWrappers) close() (jaxdem.CheckpointLoader method) (jaxdem.CheckpointModelLoader method) (jaxdem.CheckpointModelWriter method) (jaxdem.CheckpointWriter method) (jaxdem.VTKWriter method) (jaxdem.writers.CheckpointLoader method) (jaxdem.writers.CheckpointModelLoader method) (jaxdem.writers.CheckpointModelWriter method) (jaxdem.writers.checkpoints.CheckpointLoader method) (jaxdem.writers.checkpoints.CheckpointModelLoader method) (jaxdem.writers.checkpoints.CheckpointModelWriter method) (jaxdem.writers.checkpoints.CheckpointWriter method) (jaxdem.writers.CheckpointWriter method) (jaxdem.writers.VTKWriter method) (jaxdem.writers.vtkWriter.VTKWriter method) clump_ID (jaxdem.State attribute) (jaxdem.state.State attribute) Collider (class in jaxdem) (class in jaxdem.colliders) collider (jaxdem.System attribute) (jaxdem.system.System attribute) compute_advantages() (jaxdem.rl.Trainer static method) compute_body_centers_from_elements() (in module jaxdem.forces.deformable_particle) compute_clump_properties() (in module jaxdem.utils) (in module jaxdem.utils.clumps) compute_element_properties_2D() (in module jaxdem.forces.deformable_particle) compute_element_properties_3D() (in module jaxdem.forces.deformable_particle) compute_energy() (in module jaxdem.utils) (in module jaxdem.utils.thermal) compute_force() (jaxdem.Collider static method) (jaxdem.colliders.cell_list.DynamicCellList static method) (jaxdem.colliders.cell_list.StaticCellList static method) (jaxdem.colliders.Collider static method) (jaxdem.colliders.DynamicCellList static method) (jaxdem.colliders.naive.NaiveSimulator static method) (jaxdem.colliders.NaiveSimulator static method) (jaxdem.colliders.neighbor_list.NeighborList static method) (jaxdem.colliders.NeighborList static method) (jaxdem.colliders.StaticCellList static method) (jaxdem.colliders.sweep_and_prune.SweepAndPrune static method) compute_hash() (in module jaxdem.colliders.sweep_and_prune) compute_inverse_reference_shape() (in module jaxdem.forces.deformable_particle) compute_inverse_reference_shape_tet() (in module jaxdem.forces.deformable_particle) compute_mesh_properties() (in module jaxdem.utils.geometricAsperityCreation) compute_packing_fraction() (in module jaxdem.utils) (in module jaxdem.utils.packingUtils) compute_particle_volume() (in module jaxdem.utils) (in module jaxdem.utils.packingUtils) compute_polygon_properties() (in module jaxdem.utils.geometricAsperityCreation) compute_potential_energy() (in module jaxdem.utils) (in module jaxdem.utils.thermal) (jaxdem.Collider static method) (jaxdem.colliders.cell_list.DynamicCellList static method) (jaxdem.colliders.cell_list.StaticCellList static method) (jaxdem.colliders.Collider static method) (jaxdem.colliders.DynamicCellList static method) (jaxdem.colliders.naive.NaiveSimulator static method) (jaxdem.colliders.NaiveSimulator static method) (jaxdem.colliders.neighbor_list.NeighborList static method) (jaxdem.colliders.NeighborList static method) (jaxdem.colliders.StaticCellList static method) (jaxdem.DeformableParticleContainer static method) (jaxdem.ForceManager static method) (jaxdem.forces.deformable_particle.DeformableParticleContainer static method) (jaxdem.forces.DeformableParticleContainer static method) (jaxdem.forces.force_manager.ForceManager static method) (jaxdem.forces.ForceManager static method)

compute_potential_energy_per_particle() (in module jaxdem.utils) (in module jaxdem.utils.thermal) compute_rotational_kinetic_energy() (in module jaxdem.utils) (in module jaxdem.utils.thermal) compute_rotational_kinetic_energy_per_particle() (in module jaxdem.utils) (in module jaxdem.utils.thermal) compute_temperature() (in module jaxdem.utils) (in module jaxdem.utils.thermal) compute_tetra_volume() (in module jaxdem.forces.deformable_particle) compute_translational_kinetic_energy() (in module jaxdem.utils) (in module jaxdem.utils.thermal) compute_translational_kinetic_energy_per_particle() (in module jaxdem.utils) (in module jaxdem.utils.thermal) compute_virtual_shift() (in module jaxdem.colliders.sweep_and_prune) conj() (jaxdem.utils.Quaternion static method) (jaxdem.utils.quaternion.Quaternion static method) control_nvt_density() (in module jaxdem.utils) (in module jaxdem.utils.dynamicsRoutines) control_nvt_density_rollout() (in module jaxdem.utils) (in module jaxdem.utils.dynamicsRoutines) count_dynamic_dofs() (in module jaxdem.utils.thermal) counts (jaxdem.analysis.Binned attribute), [1] (jaxdem.analysis.engine.Binned attribute), [1] counts_per_bin (jaxdem.analysis.Pairs attribute), [1] (jaxdem.analysis.pairs.Pairs attribute), [1] coupled (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) Create() (jaxdem.colliders.cell_list.DynamicCellList class method) (jaxdem.colliders.cell_list.StaticCellList class method) (jaxdem.colliders.DynamicCellList class method) (jaxdem.colliders.neighbor_list.NeighborList class method) (jaxdem.colliders.NeighborList class method) (jaxdem.colliders.StaticCellList class method) create() (jaxdem.DeformableParticleContainer static method) Create() (jaxdem.Domain class method) (jaxdem.domains.Domain class method) (jaxdem.domains.reflect.ReflectDomain class method) (jaxdem.domains.ReflectDomain class method) create() (jaxdem.Factory class method) (jaxdem.factory.Factory class method) (jaxdem.ForceManager static method) (jaxdem.forces.deformable_particle.DeformableParticleContainer static method) (jaxdem.forces.DeformableParticleContainer static method) (jaxdem.forces.force_manager.ForceManager static method) (jaxdem.forces.ForceManager static method) Create() (jaxdem.minimizers.fire.LinearFIRE class method) (jaxdem.minimizers.fire.RotationFIRE class method) (jaxdem.minimizers.gradient_descent.LinearGradientDescent class method) (jaxdem.minimizers.gradient_descent.RotationGradientDescent class method) (jaxdem.minimizers.LinearFIRE class method) (jaxdem.minimizers.LinearGradientDescent class method) (jaxdem.minimizers.RotationFIRE class method) (jaxdem.minimizers.RotationGradientDescent class method) (jaxdem.rl.environments.multi_navigator.MultiNavigator class method) (jaxdem.rl.environments.multi_roller.MultiRoller class method) (jaxdem.rl.environments.MultiNavigator class method) (jaxdem.rl.environments.MultiRoller class method) (jaxdem.rl.environments.single_navigator.SingleNavigator class method) (jaxdem.rl.environments.single_roller.SingleRoller3D class method) (jaxdem.rl.environments.SingleNavigator class method) (jaxdem.rl.environments.SingleRoller3D class method) (jaxdem.rl.trainers.PPOTrainer class method) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer class method) create() (jaxdem.State static method) (jaxdem.state.State static method) (jaxdem.System static method) (jaxdem.system.System static method) (jaxdem.utils.Quaternion static method) (jaxdem.utils.quaternion.Quaternion static method) create_force_energy_functions() (jaxdem.DeformableParticleContainer static method) (jaxdem.forces.deformable_particle.DeformableParticleContainer static method) (jaxdem.forces.DeformableParticleContainer static method) create_force_function() (jaxdem.DeformableParticleContainer static method) (jaxdem.forces.deformable_particle.DeformableParticleContainer static method) (jaxdem.forces.DeformableParticleContainer static method) create_neighbor_list() (jaxdem.Collider static method) (jaxdem.colliders.cell_list.DynamicCellList static method) (jaxdem.colliders.cell_list.StaticCellList static method) (jaxdem.colliders.Collider static method) (jaxdem.colliders.DynamicCellList static method) (jaxdem.colliders.naive.NaiveSimulator static method) (jaxdem.colliders.NaiveSimulator static method) (jaxdem.colliders.neighbor_list.NeighborList static method) (jaxdem.colliders.NeighborList static method) (jaxdem.colliders.StaticCellList static method) (jaxdem.colliders.sweep_and_prune.SweepAndPrune static method) critic (jaxdem.rl.models.ActorCritic attribute) (jaxdem.rl.models.LSTM.LSTMActorCritic attribute) (jaxdem.rl.models.LSTMActorCritic attribute) (jaxdem.rl.models.MLP.ActorCritic attribute) (jaxdem.rl.models.MLP.SharedActorCritic attribute) (jaxdem.rl.models.SharedActorCritic attribute) cross() (in module jaxdem.utils.linalg) cross_3X3D_1X2D() (in module jaxdem.utils) (in module jaxdem.utils.linalg) cutoff (jaxdem.colliders.neighbor_list.NeighborList attribute), [1] (jaxdem.colliders.NeighborList attribute), [1]

D

decode_callable() (in module jaxdem.utils) (in module jaxdem.utils.serialization) deformable_ID (jaxdem.State attribute) (jaxdem.state.State attribute) DeformableParticleContainer (class in jaxdem) (class in jaxdem.forces) (class in jaxdem.forces.deformable_particle) density (jaxdem.Material attribute) (jaxdem.materials.Material attribute) dim (jaxdem.State property) (jaxdem.state.State property) (jaxdem.System attribute) (jaxdem.system.System attribute) DirectEuler (class in jaxdem.integrators) (class in jaxdem.integrators.direct_euler) directory (jaxdem.CheckpointLoader attribute) (jaxdem.CheckpointModelLoader attribute) (jaxdem.CheckpointModelWriter attribute) (jaxdem.CheckpointWriter attribute) (jaxdem.VTKWriter attribute) (jaxdem.writers.CheckpointLoader attribute) (jaxdem.writers.CheckpointModelLoader attribute) (jaxdem.writers.CheckpointModelWriter attribute) (jaxdem.writers.checkpoints.CheckpointLoader attribute) (jaxdem.writers.checkpoints.CheckpointModelLoader attribute) (jaxdem.writers.checkpoints.CheckpointModelWriter attribute) (jaxdem.writers.checkpoints.CheckpointWriter attribute) (jaxdem.writers.CheckpointWriter attribute) (jaxdem.writers.VTKWriter attribute) (jaxdem.writers.vtkWriter.VTKWriter attribute) displacement() (jaxdem.Domain static method) (jaxdem.domains.Domain static method) (jaxdem.domains.periodic.PeriodicDomain static method) (jaxdem.domains.PeriodicDomain static method) Domain (class in jaxdem) (class in jaxdem.domains) domain (jaxdem.System attribute) (jaxdem.system.System attribute) done (jaxdem.rl.TrajectoryData attribute)

done() (jaxdem.rl.Environment static method) (jaxdem.rl.environments.Environment static method) (jaxdem.rl.environments.multi_navigator.MultiNavigator static method) (jaxdem.rl.environments.multi_roller.MultiRoller static method) (jaxdem.rl.environments.MultiNavigator static method) (jaxdem.rl.environments.MultiRoller static method) (jaxdem.rl.environments.single_navigator.SingleNavigator static method) (jaxdem.rl.environments.single_roller.SingleRoller3D static method) (jaxdem.rl.environments.SingleNavigator static method) (jaxdem.rl.environments.SingleRoller3D static method) dt (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) (jaxdem.System attribute) (jaxdem.system.System attribute) dt_max (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) dt_max_scale (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) dt_min (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) dt_min_scale (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) dt_reverse (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) duplicate_clump_template() (in module jaxdem.utils.geometricAsperityCreation) DynamicCellList (class in jaxdem.colliders) (class in jaxdem.colliders.cell_list)

E

eb (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) ec (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) edges (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) edges_ID (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) el (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) Elastic (class in jaxdem.materials) (class in jaxdem.materials.elasticMats) ElasticFriction (class in jaxdem.materials) (class in jaxdem.materials.elasticMats) element_adjacency (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) element_adjacency_edges (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) element_adjacency_ID (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) elements (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) elements_ID (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) em (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) encode_callable() (in module jaxdem.utils) (in module jaxdem.utils.serialization) encoder (jaxdem.rl.models.LSTM.LSTMActorCritic attribute) (jaxdem.rl.models.LSTMActorCritic attribute) energy() (jaxdem.ForceModel static method) (jaxdem.ForceRouter static method) (jaxdem.forces.ForceModel static method) (jaxdem.forces.ForceRouter static method) (jaxdem.forces.law_combiner.LawCombiner static method) (jaxdem.forces.LawCombiner static method) (jaxdem.forces.LennardJones static method) (jaxdem.forces.lennardjones.LennardJones static method) (jaxdem.forces.router.ForceRouter static method) (jaxdem.forces.spring.SpringForce static method) (jaxdem.forces.SpringForce static method) (jaxdem.forces.WCA static method) (jaxdem.forces.wca.WCA static method) (jaxdem.forces.wca_shifted.WCAShifted static method) (jaxdem.forces.WCAShifted static method) (jaxdem.LawCombiner static method)

energy_functions (jaxdem.ForceManager attribute) (jaxdem.forces.force_manager.ForceManager attribute) (jaxdem.forces.ForceManager attribute) env (jaxdem.rl.Trainer attribute) env_params (jaxdem.rl.Environment attribute) (jaxdem.rl.environments.Environment attribute) env_step() (in module jaxdem.utils) (in module jaxdem.utils.environment) env_trajectory_rollout() (in module jaxdem.utils) (in module jaxdem.utils.environment) Environment (class in jaxdem.rl) (class in jaxdem.rl.environments) epoch() (jaxdem.rl.Trainer static method) (jaxdem.rl.trainers.PPOTrainer static method) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer static method) epsilon (jaxdem.materials.LJMaterial attribute) (jaxdem.materials.ljMats.LJMaterial attribute) eta (jaxdem.integrators.vicsek.VicsekExtrinsic attribute) (jaxdem.integrators.vicsek.VicsekIntrinsic attribute) (jaxdem.integrators.VicsekExtrinsic attribute) (jaxdem.integrators.VicsekIntrinsic attribute) evaluate_binned() (in module jaxdem.analysis) (in module jaxdem.analysis.engine) external_force (jaxdem.ForceManager attribute) (jaxdem.forces.force_manager.ForceManager attribute) (jaxdem.forces.ForceManager attribute) external_force_com (jaxdem.ForceManager attribute) (jaxdem.forces.force_manager.ForceManager attribute) (jaxdem.forces.ForceManager attribute) external_torque (jaxdem.ForceManager attribute) (jaxdem.forces.force_manager.ForceManager attribute) (jaxdem.forces.ForceManager attribute)

F

f_alpha (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) f_dec (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) f_inc (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) Factory (class in jaxdem) (class in jaxdem.factory) fixed (jaxdem.State attribute) (jaxdem.state.State attribute) FlatPairs (in module jaxdem.analysis.pairs) flatten_pairs() (in module jaxdem.analysis.pairs) force (jaxdem.State attribute) (jaxdem.state.State attribute) force() (in module jaxdem.colliders.sweep_and_prune) (jaxdem.ForceModel static method) (jaxdem.ForceRouter static method) (jaxdem.forces.ForceModel static method) (jaxdem.forces.ForceRouter static method) (jaxdem.forces.law_combiner.LawCombiner static method) (jaxdem.forces.LawCombiner static method) (jaxdem.forces.LennardJones static method) (jaxdem.forces.lennardjones.LennardJones static method) (jaxdem.forces.router.ForceRouter static method) (jaxdem.forces.spring.SpringForce static method) (jaxdem.forces.SpringForce static method) (jaxdem.forces.WCA static method) (jaxdem.forces.wca.WCA static method) (jaxdem.forces.wca_shifted.WCAShifted static method) (jaxdem.forces.WCAShifted static method) (jaxdem.LawCombiner static method) force_functions (jaxdem.ForceManager attribute) (jaxdem.forces.force_manager.ForceManager attribute) (jaxdem.forces.ForceManager attribute) force_manager (jaxdem.System attribute) (jaxdem.system.System attribute)

force_model (jaxdem.System attribute) (jaxdem.system.System attribute) ForceManager (class in jaxdem) (class in jaxdem.forces) (class in jaxdem.forces.force_manager) ForceModel (class in jaxdem) (class in jaxdem.forces) ForceRouter (class in jaxdem) (class in jaxdem.forces) (class in jaxdem.forces.router) forward_and_log_det() (jaxdem.rl.actionSpaces.BoxSpace method) (jaxdem.rl.actionSpaces.boxSpace.BoxSpace method) (jaxdem.rl.actionSpaces.FreeSpace method) (jaxdem.rl.actionSpaces.freeSpace.FreeSpace method) (jaxdem.rl.actionSpaces.MaxNormSpace method) (jaxdem.rl.actionSpaces.maxNormSpace.MaxNormSpace method) forward_log_det_jacobian() (jaxdem.rl.actionSpaces.BoxSpace method) (jaxdem.rl.actionSpaces.boxSpace.BoxSpace method) (jaxdem.rl.actionSpaces.MaxNormSpace method) (jaxdem.rl.actionSpaces.maxNormSpace.MaxNormSpace method) FreeDomain (class in jaxdem.domains) (class in jaxdem.domains.free) FreeSpace (class in jaxdem.rl.actionSpaces) (class in jaxdem.rl.actionSpaces.freeSpace) from_dict() (jaxdem.ForceRouter static method) (jaxdem.forces.ForceRouter static method) (jaxdem.forces.router.ForceRouter static method) from_materials() (jaxdem.materials.MaterialTable static method) (jaxdem.materials.materialTable.MaterialTable static method) (jaxdem.MaterialTable static method) from_source() (jaxdem.analysis.bins.LagBinsExact class method) (jaxdem.analysis.bins.LagBinsLinear class method) (jaxdem.analysis.bins.LagBinsLog class method) (jaxdem.analysis.bins.LagBinsPseudoLog class method) (jaxdem.analysis.bins.TimeBins class method) (jaxdem.analysis.LagBinsExact class method) (jaxdem.analysis.LagBinsLinear class method) (jaxdem.analysis.LagBinsLog class method) (jaxdem.analysis.LagBinsPseudoLog class method) (jaxdem.analysis.TimeBins class method)

G

gamma (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) generate_asperities_2d() (in module jaxdem.utils.geometricAsperityCreation) generate_asperities_3d() (in module jaxdem.utils.geometricAsperityCreation) generate_ga_clump_state() (in module jaxdem.utils.geometricAsperityCreation) generate_ga_deformable_state() (in module jaxdem.utils.geometricAsperityCreation) generate_mesh() (in module jaxdem.utils.geometricAsperityCreation) get_effective_property() (jaxdem.material_matchmakers.harmonic.HarmonicMaterialMatchmaker static method) (jaxdem.material_matchmakers.HarmonicMaterialMatchmaker static method) (jaxdem.material_matchmakers.linear.LinearMaterialMatchmaker static method) (jaxdem.material_matchmakers.LinearMaterialMatchmaker static method) (jaxdem.material_matchmakers.MaterialMatchmaker static method) (jaxdem.MaterialMatchmaker static method)

get_polydisperse_radii() (in module jaxdem.utils.dispersity) graphdef (jaxdem.rl.Trainer attribute) graphstate (jaxdem.rl.Trainer attribute) gravity (jaxdem.ForceManager attribute) (jaxdem.forces.force_manager.ForceManager attribute) (jaxdem.forces.ForceManager attribute) grid_state() (in module jaxdem.utils) (in module jaxdem.utils.gridState)

H

HarmonicMaterialMatchmaker (class in jaxdem.material_matchmakers) (class in jaxdem.material_matchmakers.harmonic)

I

importance_sampling_alpha (jaxdem.rl.trainers.PPOTrainer attribute) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer attribute) importance_sampling_beta (jaxdem.rl.trainers.PPOTrainer attribute) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer attribute) inertia (jaxdem.State attribute) (jaxdem.state.State attribute) info() (jaxdem.rl.Environment static method) (jaxdem.rl.environments.Environment static method) initial_bending (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) initial_body_contents (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) initial_edge_lengths (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) initial_element_measures (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) initial_tet_volumes (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) initialize() (jaxdem.Integrator static method) (jaxdem.minimizers.fire.LinearFIRE static method) (jaxdem.minimizers.fire.RotationFIRE static method) (jaxdem.minimizers.LinearFIRE static method) (jaxdem.minimizers.RotationFIRE static method) Integrator (class in jaxdem) inv() (jaxdem.utils.Quaternion static method) (jaxdem.utils.quaternion.Quaternion static method)

inv_ref_shape (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) inv_ref_tet_shape (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) inverse_and_log_det() (jaxdem.rl.actionSpaces.BoxSpace method) (jaxdem.rl.actionSpaces.boxSpace.BoxSpace method) (jaxdem.rl.actionSpaces.FreeSpace method) (jaxdem.rl.actionSpaces.freeSpace.FreeSpace method) (jaxdem.rl.actionSpaces.MaxNormSpace method) (jaxdem.rl.actionSpaces.maxNormSpace.MaxNormSpace method) is_com_force (jaxdem.ForceManager attribute) (jaxdem.forces.force_manager.ForceManager attribute) (jaxdem.forces.ForceManager attribute) is_master (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) is_valid (jaxdem.State property) (jaxdem.state.State property) is_wrapped() (in module jaxdem.rl) (in module jaxdem.rl.envWrappers) isf_angular_kernel_2d() (in module jaxdem.analysis.kernels) isf_self_isotropic_kernel() (in module jaxdem.analysis.kernels) isf_self_kvecs_kernel() (in module jaxdem.analysis.kernels) iter_tuples() (jaxdem.analysis.bins.BinSpec method) (jaxdem.analysis.bins.LagBinsExact method) (jaxdem.analysis.bins.TimeBins method) (jaxdem.analysis.BinSpec method) (jaxdem.analysis.LagBinsExact method) (jaxdem.analysis.TimeBins method)

J

j0() (in module jaxdem.analysis.bessel) j1() (in module jaxdem.analysis.bessel) jaxdem module jaxdem.analysis module jaxdem.analysis.bessel module jaxdem.analysis.bins module jaxdem.analysis.engine module jaxdem.analysis.kernels module jaxdem.analysis.pairs module jaxdem.colliders module jaxdem.colliders.cell_list module jaxdem.colliders.naive module jaxdem.colliders.neighbor_list module jaxdem.colliders.sweep_and_prune module jaxdem.domains module jaxdem.domains.free module jaxdem.domains.periodic module jaxdem.domains.reflect module jaxdem.domains.reflect_sphere module jaxdem.factory module jaxdem.forces module jaxdem.forces.deformable_particle module jaxdem.forces.force_manager module jaxdem.forces.law_combiner module jaxdem.forces.lennardjones module jaxdem.forces.router module jaxdem.forces.spring module jaxdem.forces.wca module jaxdem.forces.wca_shifted module jaxdem.integrators module jaxdem.integrators.direct_euler module jaxdem.integrators.spiral module jaxdem.integrators.velocity_verlet module jaxdem.integrators.velocity_verlet_spiral module jaxdem.integrators.vicsek module jaxdem.material_matchmakers module jaxdem.material_matchmakers.harmonic module jaxdem.material_matchmakers.linear module jaxdem.materials module jaxdem.materials.elasticMats module jaxdem.materials.ljMats module jaxdem.materials.materialTable module jaxdem.minimizers module jaxdem.minimizers.fire module jaxdem.minimizers.gradient_descent module

jaxdem.minimizers.routines module jaxdem.rl module jaxdem.rl.actionSpaces module jaxdem.rl.actionSpaces.boxSpace module jaxdem.rl.actionSpaces.freeSpace module jaxdem.rl.actionSpaces.maxNormSpace module jaxdem.rl.environments module jaxdem.rl.environments.multi_navigator module jaxdem.rl.environments.multi_roller module jaxdem.rl.environments.single_navigator module jaxdem.rl.environments.single_roller module jaxdem.rl.envWrappers module jaxdem.rl.models module jaxdem.rl.models.LSTM module jaxdem.rl.models.MLP module jaxdem.rl.trainers module jaxdem.rl.trainers.PPOtrainer module jaxdem.state module jaxdem.system module jaxdem.utils module jaxdem.utils.angles module jaxdem.utils.clumps module jaxdem.utils.dispersity module jaxdem.utils.dynamicsRoutines module jaxdem.utils.environment module jaxdem.utils.geometricAsperityCreation module jaxdem.utils.gridState module jaxdem.utils.h5 module jaxdem.utils.jamming module jaxdem.utils.linalg module jaxdem.utils.packingUtils module jaxdem.utils.quaternion module jaxdem.utils.randomizeOrientations module jaxdem.utils.randomSphereConfiguration module jaxdem.utils.randomState module jaxdem.utils.rollout_schedules module jaxdem.utils.serialization module jaxdem.utils.thermal module jaxdem.writers module jaxdem.writers.checkpoints module jaxdem.writers.vtkDomainWriter module jaxdem.writers.vtkSpheresWriter module jaxdem.writers.vtkWriter module

K

KernelFn (class in jaxdem.analysis) (class in jaxdem.analysis.kernels) key (jaxdem.rl.Trainer attribute) (jaxdem.System attribute) (jaxdem.system.System attribute) kws (jaxdem.rl.ActionSpace property) (jaxdem.rl.actionSpaces.ActionSpace property) (jaxdem.rl.actionSpaces.BoxSpace property) (jaxdem.rl.actionSpaces.boxSpace.BoxSpace property) (jaxdem.rl.actionSpaces.FreeSpace property) (jaxdem.rl.actionSpaces.freeSpace.FreeSpace property) (jaxdem.rl.actionSpaces.MaxNormSpace property) (jaxdem.rl.actionSpaces.maxNormSpace.MaxNormSpace property)

L

LagBinsExact (class in jaxdem.analysis) (class in jaxdem.analysis.bins) LagBinsLinear (class in jaxdem.analysis) (class in jaxdem.analysis.bins) LagBinsLog (class in jaxdem.analysis) (class in jaxdem.analysis.bins) LagBinsPseudoLog (class in jaxdem.analysis) (class in jaxdem.analysis.bins) lame_lambda (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) lame_mu (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) latest_step() (jaxdem.CheckpointModelLoader method) (jaxdem.writers.CheckpointModelLoader method) (jaxdem.writers.checkpoints.CheckpointModelLoader method) LawCombiner (class in jaxdem) (class in jaxdem.forces) (class in jaxdem.forces.law_combiner) laws (jaxdem.ForceModel attribute) (jaxdem.forces.ForceModel attribute) learning_rate (jaxdem.minimizers.gradient_descent.LinearGradientDescent attribute) (jaxdem.minimizers.gradient_descent.RotationGradientDescent attribute) (jaxdem.minimizers.LinearGradientDescent attribute) (jaxdem.minimizers.RotationGradientDescent attribute) LennardJones (class in jaxdem.forces) (class in jaxdem.forces.lennardjones) lidar() (in module jaxdem.utils) (in module jaxdem.utils.environment)

linear_integrator (jaxdem.System attribute) (jaxdem.system.System attribute) LinearFIRE (class in jaxdem.minimizers) (class in jaxdem.minimizers.fire) LinearGradientDescent (class in jaxdem.minimizers) (class in jaxdem.minimizers.gradient_descent) LinearIntegrator (class in jaxdem) (class in jaxdem.integrators) LinearMaterialMatchmaker (class in jaxdem.material_matchmakers) (class in jaxdem.material_matchmakers.linear) LinearMinimizer (class in jaxdem) (class in jaxdem.minimizers) LJMaterial (class in jaxdem.materials) (class in jaxdem.materials.ljMats) load() (in module jaxdem.utils.h5) (jaxdem.CheckpointLoader method) (jaxdem.CheckpointModelLoader method) (jaxdem.writers.CheckpointLoader method) (jaxdem.writers.CheckpointModelLoader method) (jaxdem.writers.checkpoints.CheckpointLoader method) (jaxdem.writers.checkpoints.CheckpointModelLoader method) log_prob (jaxdem.rl.TrajectoryData attribute) loss_fn() (jaxdem.rl.trainers.PPOTrainer static method) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer static method) lstm_features (jaxdem.rl.models.LSTM.LSTMActorCritic attribute) (jaxdem.rl.models.LSTMActorCritic attribute) LSTMActorCritic (class in jaxdem.rl.models) (class in jaxdem.rl.models.LSTM)

M

make_save_steps_linear() (in module jaxdem.utils) (in module jaxdem.utils.rollout_schedules) make_save_steps_pseudolog() (in module jaxdem.utils) (in module jaxdem.utils.rollout_schedules) make_single_deformable_ga_particle_2d() (in module jaxdem.utils.geometricAsperityCreation) make_single_deformable_ga_particle_3d() (in module jaxdem.utils.geometricAsperityCreation) make_single_particle_2d() (in module jaxdem.utils.geometricAsperityCreation) make_single_particle_3d() (in module jaxdem.utils.geometricAsperityCreation) mass (jaxdem.State attribute) (jaxdem.state.State attribute) mat_id (jaxdem.State attribute) (jaxdem.state.State attribute) mat_table (jaxdem.System attribute) (jaxdem.system.System attribute) matcher (jaxdem.materials.MaterialTable attribute) (jaxdem.materials.materialTable.MaterialTable attribute) (jaxdem.MaterialTable attribute) Material (class in jaxdem) (class in jaxdem.materials) MaterialMatchmaker (class in jaxdem) (class in jaxdem.material_matchmakers) MaterialTable (class in jaxdem) (class in jaxdem.materials) (class in jaxdem.materials.materialTable) max_neighbors (jaxdem.colliders.neighbor_list.NeighborList attribute), [1] (jaxdem.colliders.NeighborList attribute), [1] (jaxdem.integrators.vicsek.VicsekExtrinsic attribute) (jaxdem.integrators.vicsek.VicsekIntrinsic attribute) (jaxdem.integrators.VicsekExtrinsic attribute) (jaxdem.integrators.VicsekIntrinsic attribute) max_num_agents (jaxdem.rl.Environment property) (jaxdem.rl.environments.Environment property) max_occupancy (jaxdem.colliders.cell_list.StaticCellList attribute) (jaxdem.colliders.StaticCellList attribute) max_queue_size (jaxdem.VTKWriter attribute) (jaxdem.writers.VTKWriter attribute) (jaxdem.writers.vtkWriter.VTKWriter attribute) max_to_keep (jaxdem.CheckpointModelWriter attribute) (jaxdem.CheckpointWriter attribute) (jaxdem.writers.CheckpointModelWriter attribute) (jaxdem.writers.checkpoints.CheckpointModelWriter attribute) (jaxdem.writers.checkpoints.CheckpointWriter attribute) (jaxdem.writers.CheckpointWriter attribute) max_workers (jaxdem.VTKWriter attribute) (jaxdem.writers.VTKWriter attribute) (jaxdem.writers.vtkWriter.VTKWriter attribute) MaxNormSpace (class in jaxdem.rl.actionSpaces) (class in jaxdem.rl.actionSpaces.maxNormSpace) mean (jaxdem.analysis.Binned attribute), [1] (jaxdem.analysis.engine.Binned attribute), [1] merge() (jaxdem.DeformableParticleContainer static method) (jaxdem.forces.deformable_particle.DeformableParticleContainer static method) (jaxdem.forces.DeformableParticleContainer static method) (jaxdem.State static method) (jaxdem.state.State static method) metadata (jaxdem.rl.Model property) (jaxdem.rl.models.ActorCritic property) (jaxdem.rl.models.LSTM.LSTMActorCritic property) (jaxdem.rl.models.LSTMActorCritic property) (jaxdem.rl.models.MLP.ActorCritic property) (jaxdem.rl.models.MLP.SharedActorCritic property) (jaxdem.rl.models.Model property) (jaxdem.rl.models.SharedActorCritic property) minibatch_size (jaxdem.rl.trainers.PPOTrainer attribute) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer attribute) minimize() (in module jaxdem.minimizers) (in module jaxdem.minimizers.routines) Minimizer (class in jaxdem) (class in jaxdem.minimizers) Model (class in jaxdem.rl) (class in jaxdem.rl.models) model (jaxdem.rl.Trainer property) module jaxdem jaxdem.analysis jaxdem.analysis.bessel jaxdem.analysis.bins jaxdem.analysis.engine jaxdem.analysis.kernels jaxdem.analysis.pairs jaxdem.colliders jaxdem.colliders.cell_list jaxdem.colliders.naive jaxdem.colliders.neighbor_list jaxdem.colliders.sweep_and_prune jaxdem.domains jaxdem.domains.free jaxdem.domains.periodic jaxdem.domains.reflect jaxdem.domains.reflect_sphere jaxdem.factory jaxdem.forces jaxdem.forces.deformable_particle jaxdem.forces.force_manager jaxdem.forces.law_combiner jaxdem.forces.lennardjones jaxdem.forces.router jaxdem.forces.spring jaxdem.forces.wca jaxdem.forces.wca_shifted jaxdem.integrators jaxdem.integrators.direct_euler jaxdem.integrators.spiral jaxdem.integrators.velocity_verlet jaxdem.integrators.velocity_verlet_spiral jaxdem.integrators.vicsek jaxdem.material_matchmakers jaxdem.material_matchmakers.harmonic jaxdem.material_matchmakers.linear jaxdem.materials jaxdem.materials.elasticMats jaxdem.materials.ljMats jaxdem.materials.materialTable jaxdem.minimizers jaxdem.minimizers.fire jaxdem.minimizers.gradient_descent jaxdem.minimizers.routines jaxdem.rl jaxdem.rl.actionSpaces jaxdem.rl.actionSpaces.boxSpace jaxdem.rl.actionSpaces.freeSpace jaxdem.rl.actionSpaces.maxNormSpace jaxdem.rl.environments jaxdem.rl.environments.multi_navigator jaxdem.rl.environments.multi_roller jaxdem.rl.environments.single_navigator jaxdem.rl.environments.single_roller jaxdem.rl.envWrappers jaxdem.rl.models jaxdem.rl.models.LSTM jaxdem.rl.models.MLP jaxdem.rl.trainers jaxdem.rl.trainers.PPOtrainer jaxdem.state jaxdem.system jaxdem.utils jaxdem.utils.angles jaxdem.utils.clumps jaxdem.utils.dispersity jaxdem.utils.dynamicsRoutines jaxdem.utils.environment jaxdem.utils.geometricAsperityCreation jaxdem.utils.gridState jaxdem.utils.h5 jaxdem.utils.jamming jaxdem.utils.linalg jaxdem.utils.packingUtils jaxdem.utils.quaternion jaxdem.utils.randomizeOrientations jaxdem.utils.randomSphereConfiguration jaxdem.utils.randomState jaxdem.utils.rollout_schedules jaxdem.utils.serialization jaxdem.utils.thermal jaxdem.writers jaxdem.writers.checkpoints jaxdem.writers.vtkDomainWriter jaxdem.writers.vtkSpheresWriter jaxdem.writers.vtkWriter

msad_kernel_2d() (in module jaxdem.analysis.kernels) msd_kernel() (in module jaxdem.analysis) (in module jaxdem.analysis.kernels) mu (jaxdem.materials.ElasticFriction attribute) (jaxdem.materials.elasticMats.ElasticFriction attribute) MultiNavigator (class in jaxdem.rl.environments) (class in jaxdem.rl.environments.multi_navigator) MultiRoller (class in jaxdem.rl.environments) (class in jaxdem.rl.environments.multi_roller)

N

N (jaxdem.State property) (jaxdem.state.State property) N_bad (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) N_bad_max (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) n_build_times (jaxdem.colliders.neighbor_list.NeighborList attribute), [1] (jaxdem.colliders.NeighborList attribute), [1] N_good (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) n_lidar_rays (jaxdem.rl.environments.multi_navigator.MultiNavigator attribute) (jaxdem.rl.environments.multi_roller.MultiRoller attribute) (jaxdem.rl.environments.MultiNavigator attribute) (jaxdem.rl.environments.MultiRoller attribute) N_min (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute) NaiveSimulator (class in jaxdem.colliders) (class in jaxdem.colliders.naive) neighbor_list (jaxdem.colliders.neighbor_list.NeighborList attribute), [1] (jaxdem.colliders.NeighborList attribute), [1]

neighbor_mask (jaxdem.colliders.cell_list.DynamicCellList attribute) (jaxdem.colliders.cell_list.StaticCellList attribute) (jaxdem.colliders.DynamicCellList attribute) (jaxdem.colliders.StaticCellList attribute) neighbor_radius (jaxdem.integrators.vicsek.VicsekExtrinsic attribute) (jaxdem.integrators.vicsek.VicsekIntrinsic attribute) (jaxdem.integrators.VicsekExtrinsic attribute) (jaxdem.integrators.VicsekIntrinsic attribute) NeighborList (class in jaxdem.colliders) (class in jaxdem.colliders.neighbor_list) network (jaxdem.rl.models.MLP.SharedActorCritic attribute) (jaxdem.rl.models.SharedActorCritic attribute) num_bins() (jaxdem.analysis.bins.BinSpec method) (jaxdem.analysis.bins.LagBinsExact method) (jaxdem.analysis.bins.TimeBins method) (jaxdem.analysis.BinSpec method) (jaxdem.analysis.LagBinsExact method) (jaxdem.analysis.TimeBins method) num_bodies (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute) num_envs (jaxdem.rl.Environment property) (jaxdem.rl.environments.Environment property) num_epochs (jaxdem.rl.trainers.PPOTrainer attribute) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer attribute) num_minibatches (jaxdem.rl.trainers.PPOTrainer attribute) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer attribute) num_steps_epoch (jaxdem.rl.trainers.PPOTrainer attribute) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer attribute)

O

obs (jaxdem.rl.TrajectoryData attribute) obs_dim (jaxdem.rl.models.LSTM.LSTMActorCritic attribute) (jaxdem.rl.models.LSTMActorCritic attribute) observation() (jaxdem.rl.Environment static method) (jaxdem.rl.environments.Environment static method) (jaxdem.rl.environments.multi_navigator.MultiNavigator static method) (jaxdem.rl.environments.multi_roller.MultiRoller static method) (jaxdem.rl.environments.MultiNavigator static method) (jaxdem.rl.environments.MultiRoller static method) (jaxdem.rl.environments.single_navigator.SingleNavigator static method) (jaxdem.rl.environments.single_roller.SingleRoller3D static method) (jaxdem.rl.environments.SingleNavigator static method) (jaxdem.rl.environments.SingleRoller3D static method) observation_space_size (jaxdem.rl.Environment property) (jaxdem.rl.environments.Environment property) (jaxdem.rl.environments.multi_navigator.MultiNavigator property) (jaxdem.rl.environments.multi_roller.MultiRoller property) (jaxdem.rl.environments.MultiNavigator property) (jaxdem.rl.environments.MultiRoller property) (jaxdem.rl.environments.single_navigator.SingleNavigator property) (jaxdem.rl.environments.single_roller.SingleRoller3D property) (jaxdem.rl.environments.SingleNavigator property) (jaxdem.rl.environments.SingleRoller3D property)

old_pos (jaxdem.colliders.neighbor_list.NeighborList attribute), [1] (jaxdem.colliders.NeighborList attribute), [1] one_epoch() (jaxdem.rl.trainers.PPOTrainer static method) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer static method) overflow (jaxdem.colliders.neighbor_list.NeighborList attribute), [1] (jaxdem.colliders.NeighborList attribute), [1]

P

pad_state() (in module jaxdem.colliders.sweep_and_prune) pad_to_power2() (in module jaxdem.colliders.sweep_and_prune) pair (jaxdem.materials.MaterialTable attribute) (jaxdem.materials.materialTable.MaterialTable attribute) (jaxdem.MaterialTable attribute) pair_i (jaxdem.analysis.Pairs attribute), [1] (jaxdem.analysis.pairs.Pairs attribute), [1] pair_j (jaxdem.analysis.Pairs attribute), [1] (jaxdem.analysis.pairs.Pairs attribute), [1] Pairs (class in jaxdem.analysis) (class in jaxdem.analysis.pairs) pairs (jaxdem.analysis.Binned attribute), [1] (jaxdem.analysis.engine.Binned attribute), [1] periodic (jaxdem.Domain property) (jaxdem.domains.Domain property) (jaxdem.domains.periodic.PeriodicDomain property) (jaxdem.domains.PeriodicDomain property) PeriodicDomain (class in jaxdem.domains) (class in jaxdem.domains.periodic) poisson (jaxdem.materials.Elastic attribute) (jaxdem.materials.ElasticFriction attribute) (jaxdem.materials.elasticMats.Elastic attribute) (jaxdem.materials.elasticMats.ElasticFriction attribute)

pos (jaxdem.State property) (jaxdem.state.State property) pos_c (jaxdem.State attribute) (jaxdem.state.State attribute) pos_p (jaxdem.State attribute) (jaxdem.state.State attribute) ppo_clip_eps (jaxdem.rl.trainers.PPOTrainer attribute) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer attribute) ppo_entropy_coeff (jaxdem.rl.trainers.PPOTrainer attribute) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer attribute) ppo_value_coeff (jaxdem.rl.trainers.PPOTrainer attribute) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer attribute) PPOTrainer (class in jaxdem.rl.trainers) (class in jaxdem.rl.trainers.PPOtrainer) props (jaxdem.materials.MaterialTable attribute) (jaxdem.materials.materialTable.MaterialTable attribute) (jaxdem.MaterialTable attribute)

Q

q (jaxdem.State attribute) (jaxdem.state.State attribute)

Quaternion (class in jaxdem.utils) (class in jaxdem.utils.quaternion)

R

rad (jaxdem.State attribute) (jaxdem.state.State attribute) random_sphere_configuration() (in module jaxdem.utils.randomSphereConfiguration) random_state() (in module jaxdem.utils) (in module jaxdem.utils.randomState) randomize_orientations() (in module jaxdem.utils) (in module jaxdem.utils.randomizeOrientations) ratio (jaxdem.rl.TrajectoryData attribute) RC_FACTOR (jaxdem.forces.LennardJones attribute) (jaxdem.forces.lennardjones.LennardJones attribute) ReflectDomain (class in jaxdem.domains) (class in jaxdem.domains.reflect) ReflectSphereDomain (class in jaxdem.domains) (class in jaxdem.domains.reflect_sphere) register() (jaxdem.Factory class method) (jaxdem.factory.Factory class method) registry_name() (jaxdem.Factory class method) (jaxdem.factory.Factory class method) required_material_properties (jaxdem.ForceModel property) (jaxdem.forces.ForceModel property) (jaxdem.forces.LennardJones property) (jaxdem.forces.lennardjones.LennardJones property) (jaxdem.forces.spring.SpringForce property) (jaxdem.forces.SpringForce property) (jaxdem.forces.WCA property) (jaxdem.forces.wca.WCA property) (jaxdem.forces.wca_shifted.WCAShifted property) (jaxdem.forces.WCAShifted property) reset() (jaxdem.rl.Environment static method) (jaxdem.rl.environments.Environment static method) (jaxdem.rl.environments.multi_navigator.MultiNavigator static method) (jaxdem.rl.environments.multi_roller.MultiRoller static method) (jaxdem.rl.environments.MultiNavigator static method) (jaxdem.rl.environments.MultiRoller static method) (jaxdem.rl.environments.single_navigator.SingleNavigator static method) (jaxdem.rl.environments.single_roller.SingleRoller3D static method) (jaxdem.rl.environments.SingleNavigator static method) (jaxdem.rl.environments.SingleRoller3D static method) (jaxdem.rl.Model method) (jaxdem.rl.models.LSTM.LSTMActorCritic method) (jaxdem.rl.models.LSTMActorCritic method) (jaxdem.rl.models.Model method)

reset_if_done() (jaxdem.rl.Environment static method) (jaxdem.rl.environments.Environment static method) restitution_coefficient (jaxdem.domains.reflect.ReflectDomain attribute) (jaxdem.domains.ReflectDomain attribute) reward (jaxdem.rl.TrajectoryData attribute) reward() (jaxdem.rl.Environment static method) (jaxdem.rl.environments.Environment static method) (jaxdem.rl.environments.multi_navigator.MultiNavigator static method) (jaxdem.rl.environments.multi_roller.MultiRoller static method) (jaxdem.rl.environments.MultiNavigator static method) (jaxdem.rl.environments.MultiRoller static method) (jaxdem.rl.environments.single_navigator.SingleNavigator static method) (jaxdem.rl.environments.single_roller.SingleRoller3D static method) (jaxdem.rl.environments.SingleNavigator static method) (jaxdem.rl.environments.SingleRoller3D static method) rotate() (jaxdem.utils.Quaternion static method) (jaxdem.utils.quaternion.Quaternion static method) rotate_back() (jaxdem.utils.Quaternion static method) (jaxdem.utils.quaternion.Quaternion static method) rotation_integrator (jaxdem.System attribute) (jaxdem.system.System attribute) RotationFIRE (class in jaxdem.minimizers) (class in jaxdem.minimizers.fire) RotationGradientDescent (class in jaxdem.minimizers) (class in jaxdem.minimizers.gradient_descent) RotationIntegrator (class in jaxdem) (class in jaxdem.integrators) RotationMinimizer (class in jaxdem) (class in jaxdem.minimizers) run_binned_jax() (in module jaxdem.analysis.engine)

S

same_as() (jaxdem.rl.actionSpaces.BoxSpace method) (jaxdem.rl.actionSpaces.boxSpace.BoxSpace method) (jaxdem.rl.actionSpaces.FreeSpace method) (jaxdem.rl.actionSpaces.freeSpace.FreeSpace method) (jaxdem.rl.actionSpaces.MaxNormSpace method) (jaxdem.rl.actionSpaces.maxNormSpace.MaxNormSpace method) sap_kernel_full() (in module jaxdem.colliders.sweep_and_prune) save() (in module jaxdem.utils.h5) (jaxdem.CheckpointModelWriter method) (jaxdem.CheckpointWriter method) (jaxdem.VTKWriter method) (jaxdem.writers.CheckpointModelWriter method) (jaxdem.writers.checkpoints.CheckpointModelWriter method) (jaxdem.writers.checkpoints.CheckpointWriter method) (jaxdem.writers.CheckpointWriter method) (jaxdem.writers.VTKWriter method) (jaxdem.writers.vtkWriter.VTKWriter method) save_every (jaxdem.CheckpointModelWriter attribute) (jaxdem.CheckpointWriter attribute) (jaxdem.VTKWriter attribute) (jaxdem.writers.CheckpointModelWriter attribute) (jaxdem.writers.checkpoints.CheckpointModelWriter attribute) (jaxdem.writers.checkpoints.CheckpointWriter attribute) (jaxdem.writers.CheckpointWriter attribute) (jaxdem.writers.VTKWriter attribute) (jaxdem.writers.vtkWriter.VTKWriter attribute) scale_to_packing_fraction() (in module jaxdem.utils) (in module jaxdem.utils.packingUtils) scale_to_temperature() (in module jaxdem.utils) (in module jaxdem.utils.thermal) sec2_log() (jaxdem.rl.actionSpaces.BoxSpace static method) (jaxdem.rl.actionSpaces.boxSpace.BoxSpace static method) (jaxdem.rl.actionSpaces.MaxNormSpace static method) (jaxdem.rl.actionSpaces.maxNormSpace.MaxNormSpace static method) set_temperature() (in module jaxdem.utils) (in module jaxdem.utils.thermal) shape (jaxdem.State property) (jaxdem.state.State property) SharedActorCritic (class in jaxdem.rl.models) (class in jaxdem.rl.models.MLP) shift() (jaxdem.Domain static method) (jaxdem.domains.Domain static method) (jaxdem.domains.periodic.PeriodicDomain static method) (jaxdem.domains.PeriodicDomain static method) signed_angle() (in module jaxdem.utils) (in module jaxdem.utils.angles) signed_angle_x() (in module jaxdem.utils) (in module jaxdem.utils.angles) SingleNavigator (class in jaxdem.rl.environments) (class in jaxdem.rl.environments.single_navigator) SingleRoller3D (class in jaxdem.rl.environments) (class in jaxdem.rl.environments.single_roller) skin (jaxdem.colliders.neighbor_list.NeighborList attribute), [1] (jaxdem.colliders.NeighborList attribute), [1] sort() (in module jaxdem.colliders.sweep_and_prune) species_id (jaxdem.State attribute) (jaxdem.state.State attribute) Spiral (class in jaxdem.integrators) (class in jaxdem.integrators.spiral) SpringForce (class in jaxdem.forces) (class in jaxdem.forces.spring) stack() (jaxdem.State static method) (jaxdem.state.State static method) (jaxdem.System static method) (jaxdem.system.System static method)

State (class in jaxdem) (class in jaxdem.state) state (jaxdem.rl.Environment attribute) (jaxdem.rl.environments.Environment attribute) StaticCellList (class in jaxdem.colliders) (class in jaxdem.colliders.cell_list) step() (jaxdem.rl.Environment static method) (jaxdem.rl.environments.Environment static method) (jaxdem.rl.environments.multi_navigator.MultiNavigator static method) (jaxdem.rl.environments.multi_roller.MultiRoller static method) (jaxdem.rl.environments.MultiNavigator static method) (jaxdem.rl.environments.MultiRoller static method) (jaxdem.rl.environments.single_navigator.SingleNavigator static method) (jaxdem.rl.environments.single_roller.SingleRoller3D static method) (jaxdem.rl.environments.SingleNavigator static method) (jaxdem.rl.environments.SingleRoller3D static method) (jaxdem.rl.Trainer static method) (jaxdem.System static method) (jaxdem.system.System static method) step_after_force() (jaxdem.Integrator static method) (jaxdem.integrators.direct_euler.DirectEuler static method) (jaxdem.integrators.DirectEuler static method) (jaxdem.integrators.Spiral static method) (jaxdem.integrators.spiral.Spiral static method) (jaxdem.integrators.velocity_verlet.VelocityVerlet static method) (jaxdem.integrators.velocity_verlet_spiral.VelocityVerletSpiral static method) (jaxdem.integrators.VelocityVerlet static method) (jaxdem.integrators.VelocityVerletSpiral static method) (jaxdem.integrators.vicsek.VicsekExtrinsic static method) (jaxdem.integrators.vicsek.VicsekIntrinsic static method) (jaxdem.integrators.VicsekExtrinsic static method) (jaxdem.integrators.VicsekIntrinsic static method) (jaxdem.minimizers.fire.LinearFIRE static method) (jaxdem.minimizers.fire.RotationFIRE static method) (jaxdem.minimizers.gradient_descent.LinearGradientDescent static method) (jaxdem.minimizers.gradient_descent.RotationGradientDescent static method) (jaxdem.minimizers.LinearFIRE static method) (jaxdem.minimizers.LinearGradientDescent static method) (jaxdem.minimizers.RotationFIRE static method) (jaxdem.minimizers.RotationGradientDescent static method) step_before_force() (jaxdem.Integrator static method) (jaxdem.integrators.velocity_verlet.VelocityVerlet static method) (jaxdem.integrators.velocity_verlet_spiral.VelocityVerletSpiral static method) (jaxdem.integrators.VelocityVerlet static method) (jaxdem.integrators.VelocityVerletSpiral static method) (jaxdem.minimizers.fire.LinearFIRE static method) (jaxdem.minimizers.fire.RotationFIRE static method) (jaxdem.minimizers.LinearFIRE static method) (jaxdem.minimizers.RotationFIRE static method) step_count (jaxdem.System attribute) (jaxdem.system.System attribute) stop_at_epoch (jaxdem.rl.trainers.PPOTrainer attribute) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer attribute) sums (jaxdem.analysis.Binned attribute), [1] (jaxdem.analysis.engine.Binned attribute), [1] SweeAPrune (in module jaxdem.colliders.sweep_and_prune) SweepAndPrune (class in jaxdem.colliders.sweep_and_prune) System (class in jaxdem) (class in jaxdem.system) system (jaxdem.rl.Environment attribute) (jaxdem.rl.environments.Environment attribute)

T

table (jaxdem.ForceRouter attribute) (jaxdem.forces.ForceRouter attribute) (jaxdem.forces.router.ForceRouter attribute) time (jaxdem.System attribute) (jaxdem.system.System attribute) TimeBins (class in jaxdem.analysis) (class in jaxdem.analysis.bins) torque (jaxdem.State attribute) (jaxdem.state.State attribute)

train() (jaxdem.rl.Trainer static method) (jaxdem.rl.trainers.PPOTrainer static method) (jaxdem.rl.trainers.PPOtrainer.PPOTrainer static method) Trainer (class in jaxdem.rl) trajectory_rollout() (jaxdem.rl.Trainer static method) (jaxdem.System static method) (jaxdem.system.System static method) TrajectoryData (class in jaxdem.rl) type_name (jaxdem.Factory property) (jaxdem.factory.Factory property)

U

unique_ID (jaxdem.State attribute) (jaxdem.state.State attribute) unit() (in module jaxdem.utils) (in module jaxdem.utils.linalg) (jaxdem.utils.Quaternion static method) (jaxdem.utils.quaternion.Quaternion static method) unstack() (jaxdem.State static method) (jaxdem.state.State static method) (jaxdem.System static method) (jaxdem.system.System static method)

unwrap() (in module jaxdem.rl) (in module jaxdem.rl.envWrappers) unwrap_angles_2d() (in module jaxdem.analysis.kernels) use_tetrahedral_svk (jaxdem.DeformableParticleContainer attribute) (jaxdem.forces.deformable_particle.DeformableParticleContainer attribute) (jaxdem.forces.DeformableParticleContainer attribute)

V

v0 (jaxdem.integrators.vicsek.VicsekExtrinsic attribute) (jaxdem.integrators.vicsek.VicsekIntrinsic attribute) (jaxdem.integrators.VicsekExtrinsic attribute) (jaxdem.integrators.VicsekIntrinsic attribute) value (jaxdem.rl.TrajectoryData attribute) value_of_bin() (jaxdem.analysis.bins.BinSpec method) (jaxdem.analysis.bins.LagBinsExact method) (jaxdem.analysis.bins.TimeBins method) (jaxdem.analysis.BinSpec method) (jaxdem.analysis.LagBinsExact method) (jaxdem.analysis.TimeBins method) values() (jaxdem.analysis.bins.BinSpec method) (jaxdem.analysis.BinSpec method) vectorise_env() (in module jaxdem.rl) (in module jaxdem.rl.envWrappers) vel (jaxdem.State attribute) (jaxdem.state.State attribute) velocity_scale (jaxdem.minimizers.fire.LinearFIRE attribute) (jaxdem.minimizers.fire.RotationFIRE attribute) (jaxdem.minimizers.LinearFIRE attribute) (jaxdem.minimizers.RotationFIRE attribute)

VelocityVerlet (class in jaxdem.integrators) (class in jaxdem.integrators.velocity_verlet) VelocityVerletSpiral (class in jaxdem.integrators) (class in jaxdem.integrators.velocity_verlet_spiral) VicsekExtrinsic (class in jaxdem.integrators) (class in jaxdem.integrators.vicsek) VicsekIntrinsic (class in jaxdem.integrators) (class in jaxdem.integrators.vicsek) volume (jaxdem.State attribute) (jaxdem.state.State attribute) VTKBaseWriter (class in jaxdem) (class in jaxdem.writers) VTKDomainWriter (class in jaxdem.writers) (class in jaxdem.writers.vtkDomainWriter) VTKSpheresWriter (class in jaxdem.writers) (class in jaxdem.writers.vtkSpheresWriter) VTKWriter (class in jaxdem) (class in jaxdem.writers) (class in jaxdem.writers.vtkWriter)

W

w (jaxdem.utils.Quaternion attribute) (jaxdem.utils.quaternion.Quaternion attribute) WCA (class in jaxdem.forces) (class in jaxdem.forces.wca) WCAShifted (class in jaxdem.forces) (class in jaxdem.forces.wca_shifted) weight() (jaxdem.analysis.bins.BinSpec method) (jaxdem.analysis.bins.LagBinsExact method) (jaxdem.analysis.bins.TimeBins method) (jaxdem.analysis.BinSpec method) (jaxdem.analysis.LagBinsExact method) (jaxdem.analysis.TimeBins method)

write() (jaxdem.VTKBaseWriter class method) (jaxdem.writers.VTKBaseWriter class method) (jaxdem.writers.VTKDomainWriter class method) (jaxdem.writers.vtkDomainWriter.VTKDomainWriter class method) (jaxdem.writers.VTKSpheresWriter class method) (jaxdem.writers.vtkSpheresWriter.VTKSpheresWriter class method) writers (jaxdem.VTKWriter attribute) (jaxdem.writers.VTKWriter attribute) (jaxdem.writers.vtkWriter.VTKWriter attribute)

X

xyz (jaxdem.utils.Quaternion attribute) (jaxdem.utils.quaternion.Quaternion attribute)

Y

young (jaxdem.materials.Elastic attribute) (jaxdem.materials.ElasticFriction attribute) (jaxdem.materials.elasticMats.Elastic attribute) (jaxdem.materials.elasticMats.ElasticFriction attribute)